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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 39635.6 Da PI: 7.5837 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 4 | 43 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg W + Ede+l ++v+++G+++W++Ia++++ gR++k ++ Pbr006626.1 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSEKRVV 43 899*****************************.***99876 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 135 | 169 | 10 | 46 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ Pbr006626.1 135 ERLLVSHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 169 7888889******.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.08 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-7 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.3E-9 | 3 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-12 | 4 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 5 | 38 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-9 | 7 | 44 | No hit | No description |
SuperFamily | SSF46689 | 2.09E-12 | 69 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 80 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.989 | 95 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0037 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-8 | 135 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-6 | 135 | 168 | No hit | No description |
SuperFamily | SSF46689 | 2.09E-12 | 143 | 171 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MCTRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSEK RVVNGLGLVY STLEGKEGYH 60 LIERCFCNII TYMNNIYELN DAGKSCRLRW FNQLDPRINR NPFTEEEXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXERLLVS HRIHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERSR 180 LNHSKLIRNT STAQTSFMSI ITNNNEPKSS SKQDHPLQIN CDIGTWNLDS YNYIGKYYSC 240 SDRNYHQYRP AFTHSPPPPF PKEFYPNTCS ATMHQDHNKD QPIEFYDFLQ VNTESNGSEV 300 IDNARKEEEE VDQEGTGQQK SNVAGLPFID FLAVNTGISS * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229592 | 5e-42 | KP229592.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB36) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341782.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | A0A0H4CRL4 | 3e-97 | A0A0H4CRL4_BETPL; MYB transcription factor 3 | ||||
STRING | POPTR_0015s05130.1 | 1e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-72 | myb domain protein 52 |